Sadly the machining of our swingarms is not within very close tolerances. One side will be longer than the other. This means it looks like the wheel is aligned, but isn’t. Use a straightened coat hanger and bend it At one end for the hole (they should be east lengths) then measure to centre of axle/nut on either side to get exact.
I do an alignment by running a string line from rear of back wheel.. down one side to front wheel below axle.
I am afraid this is only on paper, not in reality (for dyna). There are some flaws on this method, not to mention it lack of accuracy.
my bad.