Factory carb, and it's got a twin tec vti ignition kit to replace the points. I replaced the inline fuel filter last night and was about to put it back together but wasn't sure if there was another filter in the pickup in the tank? Either way, didn't have the right sized spanner to check..will pick one up after work and check.
There should be one in the tank as well.
Alright new development. Replaced the fuel filter and cleaned out the in-tank strainer (it was filthy). Took it for a ride, no change, then the bike lost all electrical power but started back up 30 seconds later. Got it home and now with the ignition on, its switching on and turn off by itself, not the engine just the electrical system. So it's definitely something electrical..
It has circuit breakers and one more modern relay, which I assume isnt factory as it's Bosch.
Just discovered a couple of loose ground wires up by the head light assembly! Will take it for a quick ride before work tomorrow and see how she goes!
So I'm fairly sure after replacing my coil, leads, spark plugs, battery, fuel filter, cleaning my fuel tank, testing my regulator and stator and compression testing to make sure my valves weren't damaged...it was the main circuit breaker after all. Just took it out for a decent 45 minute ride and had no issues at all. Will report back if the misfire rears its head again, but it looks like I'm in the clear for now! Thanks for the help everyone.