I hope the push rod is sitting in the lifter and rocker arm. Double check that. The rocker gear has a fair bit of movement so you may need to loosen the 6 bolts to move it over to miss the pushrod tubes. The inside top of the tubes is where they normally rub and can be opened up a few thou with a dremal.
something for you to look at
http://harleytechtalk.org/htt/index.php/topic,55686.msg587984.html#new
Thans Ando,
Interesting how they chose a different base map. Hmm!!
Also... see... this is where it does my head in.
I'd start with the EPQ176-03 MAP. The biggest issue as I see it, is matching up the ignition timing with the motors needs. Everything else gets changed while v-tuning anyway. The cam adjustment you just use the cam selector tool, use the estimator to get you started. Then before doing any v-tuning use the record cam data function to get the intake closing data log, to get that squared away. Also set all of your pertinent values in the tuning constants section.
ARRRGGH!!!!